PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G135200.1
Common NameB456_002G135200, LOC105785209
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 333aa    MW: 37344.3 Da    PI: 8.5792
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G135200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.76e-36251172103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  e+         weF+++ Fkkg k+
  Gorai.002G135200.1  25 FLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPER---------WEFANEFFKKGGKH 106
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Gorai.002G135200.1 107 LLCEIHRRKTA 117
                         ********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3717109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.72E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.7E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MALMVDTCEG VLLSLEPHKA VPAPFLTKTY QLVDDPSTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP ERWEFANEFF KKGGKHLLCE IHRRKTAQPS  120
INHHYHPHIP HSALNAPSFF PFPSQVSISP TDMDDSPPLS SPRGAIGGYG SSVTALSEDN  180
ERLRRSNSLL MSELTHMRKL YSDIIYFVQN HVKPVTPGNS YSPSLLLSGP PPAVNTSTSL  240
LQKPLNQLLG YYPKSPNPQF QGLNSPTATS QSSLTIVEEP SSNSCKTRLF GVPLQSKKRL  300
HPEYSTAANM ETSKARLVLE KDDLSCIYRH LH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-221011611131Heat shock factor protein 1
5d5v_B5e-221011611131Heat shock factor protein 1
5d5v_D5e-221011611131Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6839100.0KJ683910.1 Gossypium hirsutum heat shock transcription factor (HSF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466619.10.0PREDICTED: heat stress transcription factor B-4-like isoform X2
SwissprotQ9C6351e-114HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0D2MAN00.0A0A0D2MAN0_G
STRINGPOPTR_0002s12640.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-114heat shock transcription factor B4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]